Tutorial.2nd.mineral.physics

Tutorial: Molecular dynamics

Visualization tools:

1. JMOL: an open-source Java viewer for chemical structures in 3D

jmol address:

http://jmol.sourceforge.net/

jmol download:

http://sourceforge.net/projects/jmol/files/latest/download?source=files

2. Example 1: Snapshot of Fe3C run

file @ http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/mdfe3c.xyz

3. VMD: visual molecular dynamics

address:

http://www.ks.uiuc.edu/Research/vmd/

Download:

http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD

4. Example 2: C in forsterite melt at mid-mantle conditions. files @

http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a21-C.xyz.gz

http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a21-CO2.xyz.gz