Tutorial.2nd.mineral.physics

Revision as of 18:26, 25 July 2012

Tutorial: Molecular dynamics

Visualization tools:

1. JMOL: an open-source Java viewer for chemical structures in 3D

jmol address: http://jmol.sourceforge.net/

jmol download: http://sourceforge.net/projects/jmol/files/latest/download?source=files

2. Example 1: Snapshot of Fe3C run file @ http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/mdfe3c.xyz

3. VMD: visual molecular dynamics

address: http://www.ks.uiuc.edu/Research/vmd/

Download: http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD

4. Example 2: C in forsterite melt at mid-mantle conditions. files @ http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a18-C.xyz.gz

http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a18-MgCO3.xyz.gz

http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a18-pure.xyz.gz