Tutorial.2nd.mineral.physics
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jmol address: | jmol address: | ||
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http://jmol.sourceforge.net/ | http://jmol.sourceforge.net/ | ||
jmol download: | jmol download: | ||
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http://sourceforge.net/projects/jmol/files/latest/download?source=files | http://sourceforge.net/projects/jmol/files/latest/download?source=files | ||
2. Example 1: Snapshot of Fe3C run | 2. Example 1: Snapshot of Fe3C run | ||
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file @ http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/mdfe3c.xyz | file @ http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/mdfe3c.xyz | ||
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address: | address: | ||
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http://www.ks.uiuc.edu/Research/vmd/ | http://www.ks.uiuc.edu/Research/vmd/ | ||
Download: | Download: | ||
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http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD | http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD | ||
4. Example 2: C in forsterite melt at mid-mantle conditions. | 4. Example 2: C in forsterite melt at mid-mantle conditions. | ||
files @ | files @ | ||
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http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a18-C.xyz.gz | http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a18-C.xyz.gz | ||
Revision as of 18:26, 25 July 2012
Tutorial: Molecular dynamics
Visualization tools:
1. JMOL: an open-source Java viewer for chemical structures in 3D
jmol address:
jmol download:
http://sourceforge.net/projects/jmol/files/latest/download?source=files
2. Example 1: Snapshot of Fe3C run
file @ http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/mdfe3c.xyz
3. VMD: visual molecular dynamics
address:
http://www.ks.uiuc.edu/Research/vmd/
Download:
http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD
4. Example 2: C in forsterite melt at mid-mantle conditions. files @
http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a18-C.xyz.gz
http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a18-MgCO3.xyz.gz
http://perso.ens-lyon.fr/razvan.caracas/tutorial-cider/a18-pure.xyz.gz
